From b3b3285a703226e551e34a89e59a0c6c4e97b16f Mon Sep 17 00:00:00 2001 From: Eevee Date: Fri, 31 Jul 2009 00:03:02 -0700 Subject: [PATCH] Improved CSV import speed by several orders of magnitude. --- pokedex/__init__.py | 85 ++++++++++++++++++++++++++++++++--------------------- 1 file changed, 51 insertions(+), 34 deletions(-) diff --git a/pokedex/__init__.py b/pokedex/__init__.py index e142ae6..1e6c6d1 100644 --- a/pokedex/__init__.py +++ b/pokedex/__init__.py @@ -27,8 +27,7 @@ def command_csvimport(engine_uri, directory='.'): from sqlalchemy.orm.attributes import instrumentation_registry - # Use autocommit in case rows fail due to foreign key incest - session = connect(engine_uri, autocommit=True, autoflush=False) + session = connect(engine_uri) metadata.create_all() @@ -74,11 +73,18 @@ def command_csvimport(engine_uri, directory='.'): reader = csv.reader(csvfile, lineterminator='\n') column_names = [unicode(column) for column in reader.next()] - # Self-referential tables may contain rows with foreign keys of - # other rows in the same table that do not yet exist. We'll keep - # a running list of these and try inserting them again after the - # rest are done - failed_rows = [] + # Self-referential tables may contain rows with foreign keys of other + # rows in the same table that do not yet exist. Pull these out and add + # them to the session last + # ASSUMPTION: Self-referential tables have a single PK called "id" + deferred_rows = [] # ( row referring to id, [foreign ids we need] ) + seen_ids = {} # primary key we've seen => 1 + + # Fetch foreign key columns that point at this table, if any + self_ref_columns = [] + for column in table_obj.c: + if any(_.references(table_obj) for _ in column.foreign_keys): + self_ref_columns.append(column) for csvs in reader: row = table_class() @@ -101,33 +107,44 @@ def command_csvimport(engine_uri, directory='.'): setattr(row, column_name, value) - try: - session.add(row) - session.flush() - except IntegrityError, e: - failed_rows.append(row) - - # Loop over the failed rows and keep trying to insert them. If a loop - # doesn't manage to insert any rows, bail. - do_another_loop = True - while failed_rows and do_another_loop: - do_another_loop = False - - for i, row in enumerate(failed_rows): - try: - session.add(row) - session.flush() - - # Success! - del failed_rows[i] - do_another_loop = True - except IntegrityError, e: - pass - - if failed_rows: - print len(failed_rows), "rows failed" - else: - print 'loaded' + # May need to stash this row and add it later if it refers to a + # later row in this table + if self_ref_columns: + foreign_ids = [getattr(row, _.name) for _ in self_ref_columns] + foreign_ids = [_ for _ in foreign_ids if _] # remove NULL ids + + if not foreign_ids: + # NULL key. Remember this row and add as usual. + seen_ids[row.id] = 1 + + elif all(_ in seen_ids for _ in foreign_ids): + # Non-NULL key we've already seen. Remember it and commit + # so we know the old row exists when we add the new one + session.commit() + seen_ids[row.id] = 1 + + else: + # Non-NULL future id. Save this and insert it later! + deferred_rows.append((row, foreign_ids)) + continue + + session.add(row) + + session.commit() + + # Attempt to add any spare rows we've collected + for row, foreign_ids in deferred_rows: + if not all(_ in seen_ids for _ in foreign_ids): + # Could happen if row A refers to B which refers to C. + # This is ridiculous and doesn't happen in my data so far + raise ValueError("Too many levels of self-reference! " + "Row was: " + str(row.__dict__)) + + session.add(row) + seen_ids[row.id] = 1 + session.commit() + + print 'loaded' def command_csvexport(engine_uri, directory='.'): import csv -- 2.7.4